STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103359374Innate immunity activator b. (617 aa)    
Predicted Functional Partners:
sav1
Salvador family WW domain containing protein 1.
    
 0.670
frmd1
FERM domain containing 1.
    
 0.652
frmd6
FERM domain containing 6.
    
 0.652
LOC103355560
Membrane associated guanylate kinase, WW and PDZ domain containing 3b.
    
 0.602
ENSSPAP00000009435
PDZ domain-containing protein.
    
 0.602
magi3
Uncharacterized protein.
    
 0.602
trip12
Thyroid hormone receptor interactor 12.
    
 0.563
LOC103364591
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.534
ENSSPAP00000023431
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.534
magi1
PDZ domain-containing protein.
    
  0.531
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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