LOC103358266 protein (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103358266

Protein kinase domain-containing protein. (439 aa)

Predicted Functional Partners:

tm9sf1

0.843

traf7

0.831

ENSSPAP00000023042

0.710

mib2

0.702

tab3

0.660

tab2

0.660

cfl2

0.655

cfl1

0.655

dstn

0.655

LOC103376010

0.654

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000023042	LOC103358266	ENSSPAP00000023042	ENSSPAP00000002979	Si:ch73-335l21.4.	Protein kinase domain-containing protein.	0.710
ENSSPAP00000023042	LOC103376010	ENSSPAP00000023042	ENSSPAP00000019506	Si:ch73-335l21.4.	P53-induced death domain protein 1.	0.843
ENSSPAP00000023042	mib2	ENSSPAP00000023042	ENSSPAP00000010032	Si:ch73-335l21.4.	Mindbomb E3 ubiquitin protein ligase 2.	0.863
ENSSPAP00000023042	tab2	ENSSPAP00000023042	ENSSPAP00000029955	Si:ch73-335l21.4.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.600
ENSSPAP00000023042	tab3	ENSSPAP00000023042	ENSSPAP00000028837	Si:ch73-335l21.4.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.600
ENSSPAP00000023042	traf7	ENSSPAP00000023042	ENSSPAP00000020334	Si:ch73-335l21.4.	TNF receptor-associated factor 7.	0.941
LOC103358266	ENSSPAP00000023042	ENSSPAP00000002979	ENSSPAP00000023042	Protein kinase domain-containing protein.	Si:ch73-335l21.4.	0.710
LOC103358266	LOC103376010	ENSSPAP00000002979	ENSSPAP00000019506	Protein kinase domain-containing protein.	P53-induced death domain protein 1.	0.654
LOC103358266	cfl1	ENSSPAP00000002979	ENSSPAP00000008934	Protein kinase domain-containing protein.	Cofilin 1; Belongs to the actin-binding proteins ADF family.	0.655
LOC103358266	cfl2	ENSSPAP00000002979	ENSSPAP00000006066	Protein kinase domain-containing protein.	Cofilin 2 (muscle); Belongs to the actin-binding proteins ADF family.	0.655
LOC103358266	dstn	ENSSPAP00000002979	ENSSPAP00000014651	Protein kinase domain-containing protein.	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	0.655
LOC103358266	mib2	ENSSPAP00000002979	ENSSPAP00000010032	Protein kinase domain-containing protein.	Mindbomb E3 ubiquitin protein ligase 2.	0.702
LOC103358266	tab2	ENSSPAP00000002979	ENSSPAP00000029955	Protein kinase domain-containing protein.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.660
LOC103358266	tab3	ENSSPAP00000002979	ENSSPAP00000028837	Protein kinase domain-containing protein.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.660
LOC103358266	tm9sf1	ENSSPAP00000002979	ENSSPAP00000011351	Protein kinase domain-containing protein.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.843
LOC103358266	traf7	ENSSPAP00000002979	ENSSPAP00000020334	Protein kinase domain-containing protein.	TNF receptor-associated factor 7.	0.831
LOC103376010	ENSSPAP00000023042	ENSSPAP00000019506	ENSSPAP00000023042	P53-induced death domain protein 1.	Si:ch73-335l21.4.	0.843
LOC103376010	LOC103358266	ENSSPAP00000019506	ENSSPAP00000002979	P53-induced death domain protein 1.	Protein kinase domain-containing protein.	0.654
LOC103376010	mib2	ENSSPAP00000019506	ENSSPAP00000010032	P53-induced death domain protein 1.	Mindbomb E3 ubiquitin protein ligase 2.	0.582
LOC103376010	tab2	ENSSPAP00000019506	ENSSPAP00000029955	P53-induced death domain protein 1.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.445