STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSPAP00000003312Sorting nexin 19a. (787 aa)    
Predicted Functional Partners:
snx29
Sorting nexin 29.
   
 0.555
tsnare1
Si:ch211-208k15.1.
     
 0.522
stx10
Syntaxin 10.
    
 0.518
stx6
Syntaxin 6; Belongs to the syntaxin family.
    
 0.518
stx8
t-SNARE coiled-coil homology domain-containing protein.
    
 0.518
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
     
 0.512
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
     
 0.487
ENSSPAP00000025083
Vesicle transport through interaction with t-SNAREs 1A.
     
 0.487
snx10
Sorting nexin 10b.
     
 0.482
LOC103364628
Sorting nexin 10a.
     
 0.482
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.