Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
npm3Nucleophosmin/nucleoplasmin, 3. (162 aa)    
Predicted Functional Partners:
LOC103363036
Nucleophosmin 1a.
   
   0.854
LOC103363949
Nucleophosmin 1b.
   
   0.849
LOC103357142
Uncharacterized protein.
    
 
 0.845
ncl
Nucleolin.
    
 
 0.845
nepro
Nucleolus and neural progenitor protein.
    
   0.839
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
 
 0.811
ENSSPAP00000009001
RecQ helicase-like 4.
    
   0.775
rpl26l1
Ribosomal protein L26.
    
   0.738
nol9
Nucleolar protein 9.
    
 
 0.710
tmem167a
Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.
      
 0.704
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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