STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fem1cFem-1 homolog c (C. elegans). (618 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 0.983
cul2
Cullin 2; Belongs to the cullin family.
    
 0.921
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.817
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.799
ELOB
Elongin B.
    
 0.745
LOC103367351
Elongin B.
    
 0.745
rnf7
Ring finger protein 7.
    
 0.715
commd8
COMM domain containing 8.
   
  0.710
LOC103358415
NEDD8 ubiquitin like modifier.
    
  0.704
ENSSPAP00000030779
Ubiquitin-like domain-containing protein.
    
  0.704
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.