STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nup42Nucleoporin 42. (482 aa)    
Predicted Functional Partners:
gle1
GLE1 RNA export mediator.
    
 0.986
nxf1
Zgc:153681.
    
 0.935
aaas
Achalasia, adrenocortical insufficiency, alacrimia.
    
 0.928
LOC103353500
Exportin 1 (CRM1 homolog, yeast) b.
     
 0.917
LOC103359566
Exportin 1 (CRM1 homolog, yeast) a.
     
 0.917
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.915
rae1
Ribonucleic acid export 1.
    
 0.903
NUP214
Nucleoporin 214.
    
 0.897
nup88
Nucleoporin 88.
     
 0.891
nup35
Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.
    
 0.880
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.