STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSPAP00000003641Uncharacterized protein. (373 aa)    
Predicted Functional Partners:
vps41
Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.
    
   0.948
ENSSPAP00000003657
Uncharacterized protein.
 
      0.897
ENSSPAP00000007329
Vacuolar protein sorting 16 homolog.
    
 
 0.894
vps18
VPS18 core subunit of CORVET and HOPS complexes.
    
 
 0.827
epg5
Ectopic P-granules autophagy protein 5 homolog (C. elegans).
   
  
 0.654
spg11
SPG11 vesicle trafficking associated, spatacsin.
   
  
 0.582
asmtl
Acetylserotonin O-methyltransferase-like.
      
 0.579
vps11
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
   
  
 0.576
HPS6
HPS6 biogenesis of lysosomal organelles complex 2 subunit 3.
    
 
 0.576
spg21
SPG21 abhydrolase domain containing, maspardin.
      
 0.576
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.