STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSPAP00000003681Ankyrin repeat domain 9. (271 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.725
commd8
COMM domain containing 8.
   
  0.716
rnf7
Ring finger protein 7.
    
  0.713
LOC103358415
NEDD8 ubiquitin like modifier.
    
  0.700
ENSSPAP00000030779
Ubiquitin-like domain-containing protein.
    
  0.700
commd1
Copper metabolism (Murr1) domain containing 1.
    
  0.698
commd4
COMM domain containing 4.
    
 0.690
LOC103366146
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
  0.678
CUL5
Cullin 5; Belongs to the cullin family.
    
  0.678
commd9
COMM domain containing 9.
    
  0.668
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: high (94%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.