STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPSF3Cleavage and polyadenylation specific factor 3. (690 aa)    
Predicted Functional Partners:
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
0.995
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.992
wdr33
WD repeat domain 33.
   
 0.992
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.990
LOC103353163
FIP1 like 1b (S. cerevisiae).
    
 0.990
sympk
Symplekin.
   
 0.987
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
   
 0.986
pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.984
FNDC10
Fibronectin type III domain containing 10.
   
 0.982
WDR77
WD repeat domain 77.
   
 0.981
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.