STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSPAP00000003811Uncharacterized protein. (289 aa)    
Predicted Functional Partners:
cdk13
Cyclin-dependent kinase 13.
    
 
 0.626
cdk12
Cyclin-dependent kinase 12; Belongs to the protein kinase superfamily.
    
 
 0.626
ccnt2
Cyclin T2; Belongs to the cyclin family.
   
 
 0.466
ccnq
Cyclin Q; Belongs to the cyclin family.
   
 
 0.466
LOC103367749
Cyclin T2b; Belongs to the cyclin family.
   
 
 0.466
ccnt1
Cyclin T1; Belongs to the cyclin family.
   
 
 0.466
ccnk
Cyclin K; Belongs to the cyclin family.
   
 
 0.466
KDM1B
Lysine demethylase 1B.
    
   0.407
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 
 0.407
LOC103374795
Amine oxidase.
    
   0.407
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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