STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103356631Exoribonuclease 1. (341 aa)    
Predicted Functional Partners:
slbp
Stem-loop binding protein.
   
 
 0.853
LOC103354668
Stem-loop binding protein 2.
   
 
 0.853
exosc5
Exosome component 5.
   
 0.727
dicer1
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.
    
 
 0.690
rpl30
Ribosomal protein L30.
     
 0.658
ENSSPAP00000004289
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
     
 0.653
rpl4
Ribosomal protein L4.
    
 0.629
exosc6
Exosome component 6.
   
 0.626
exosc4
Exosome component 4.
   
 0.626
tex10
Testis expressed 10.
   
 
  0.617
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.