STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103353899MINDY lysine 48 deubiquitinase 3. (485 aa)    
Predicted Functional Partners:
ubl7
Ubiquitin-like 7b (bone marrow stromal cell-derived).
    
 
 0.534
LOC103368258
Transmembrane protein 45B.
      
 0.506
rwdd1
RWD domain containing 1.
      
 0.493
ENSSPAP00000017444
VLIG-type G domain-containing protein.
      
 0.465
GHITM
Growth hormone inducible transmembrane protein; Belongs to the BI1 family.
      
 0.450
ublcp1
Ubiquitin-like domain containing CTD phosphatase 1.
    
 
 0.436
cluap1
Clusterin associated protein 1.
      
 0.418
ccdc97
Coiled-coil domain containing 97.
      
 0.418
chac2
Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
      
 0.416
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
      
 0.410
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.