STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103353893Ataxin 1b. (823 aa)    
Predicted Functional Partners:
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.923
LOC103353178
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.923
LOC103360593
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 0.867
atxn1l
Ataxin 1-like.
    
0.862
LOC103362868
Capicua transcriptional repressor a.
    
 
 0.860
cic
Capicua transcriptional repressor b.
    
 
 0.860
ist1
IST1 factor associated with ESCRT-III.
    
 0.707
pum1
Pumilio RNA-binding family member 1.
     
 0.668
pum2
Pumilio RNA-binding family member 2.
     
 0.668
LOC103367482
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.600
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.