STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103368372Uncharacterized protein; Belongs to the synuclein family. (127 aa)    
Predicted Functional Partners:
prkn
RBR-type E3 ubiquitin transferase.
    
 0.987
sncaip
Synuclein, alpha interacting protein.
    
 0.944
ENSSPAP00000025154
Uncharacterized protein.
    
 0.944
th
Tyrosine hydroxylase.
    
 0.922
LOC103356648
Tyrosine hydroxylase 2.
    
 0.922
LOC103369466
Heat shock protein 4a.
   
 0.912
hspa4
Heat shock protein 4b.
   
 0.912
ENSSPAP00000019170
Apolipoprotein Ea.
    
 0.901
psmc3
Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.
    
 0.900
ndufb6
NADH:ubiquinone oxidoreductase subunit B.
    
 0.882
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.