STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plekhm1Pleckstrin homology domain containing, family M (with RUN domain) member 1. (1067 aa)    
Predicted Functional Partners:
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
    
 0.991
LOC103366613
Uncharacterized protein.
    
 0.989
LOC103359881
RAB7a, member RAS oncogene family.
    
 0.989
vps39
VPS39 subunit of HOPS complex.
    
 
 0.969
gabarap
GABA(A) receptor-associated protein b.
    
 0.967
vps11
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
    
 
 0.960
gabarapl2
GABA(A) receptor-associated protein like 2.
    
 0.951
GABARAPL2
GABA type A receptor associated protein like 2.
    
 0.951
LOC103356239
Microtubule-associated protein 1 light chain 3 gamma, like.
    
 0.935
LOC103367659
Zgc:92606.
    
 0.935
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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