STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103375195Retinoblastoma-like 1 (p107). (506 aa)    
Predicted Functional Partners:
tfdp1
Transcription factor.
   
 0.989
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.974
e2f4
E2F transcription factor 4.
   
 0.973
ENSSPAP00000018523
E2F transcription factor 5.
   
 0.973
ENSSPAP00000018547
E2F transcription factor 5.
   
 0.973
e2f2
Si:ch211-160f23.5.
   
 0.969
e2f3
E2F transcription factor 3.
   
 0.967
ENSSPAP00000014203
E2F_TDP domain-containing protein.
   
 0.967
e2f1
E2F transcription factor 1.
   
 0.952
lin9
Lin-9 DREAM MuvB core complex component.
   
 0.951
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.