STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103375196WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (283 aa)    
Predicted Functional Partners:
ranbp2
RAN binding protein 2.
    
 0.998
LOC103371331
SEC24 homolog C, COPII coat complex component.
   
 0.995
sec24d
SEC24 homolog D, COPII coat complex component.
   
 0.995
nup133
Nucleoporin 133.
    
 0.994
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
    
0.994
nup98
Nucleoporin 98.
    
 0.994
mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
 0.994
wdr24
WD repeat domain 24.
    
 0.994
wdr59
WD repeat domain 59.
    
 0.994
sec23a
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.993
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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