STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103356506Ubiquitin-like domain-containing protein. (380 aa)    
Predicted Functional Partners:
LOC103371366
Activating transcription factor 4a.
   
 
 0.541
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
   
 
 0.519
amfr
Autocrine motility factor receptor b.
   
 
 0.514
LOC103358545
Activating transcription factor 4b.
   
 
 0.483
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.449
LOC103359643
Activating transcription factor 5a.
   
 
 0.435
LOC103356433
Activating transcription factor 5b.
   
 
 0.435
rnf145
Ring finger protein 145b.
    
 
 0.429
LOC103369541
Zmp:0000000662.
    
 
 0.429
rnf139
Ring finger protein 139.
    
 
 0.410
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.