STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103373419Fin bud initiation factor b. (210 aa)    
Predicted Functional Partners:
LOC103358332
Upper zone of growth plate and cartilage matrix associated b.
      
 0.527
ush1c
Usher syndrome 1C.
      
 0.526
LOC103358449
Tetraspanin.
      
 0.489
LOC103363093
Tetraspanin.
      
 0.489
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.487
zfc3h1
Uncharacterized protein.
      
 0.481
znf536
Zinc finger protein 536.
      
 0.480
LOC103371718
Uncharacterized protein.
      
 0.480
tmem204
Transmembrane protein 204.
  
   
 0.440
LOC103366690
AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
      
 0.418
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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