STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vldlrVery low density lipoprotein receptor. (833 aa)    
Predicted Functional Partners:
RELN
Reelin.
    
 0.928
pcsk9
Proprotein convertase subtilisin/kexin type 9.
    
 0.906
ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.867
ENSSPAP00000010423
DAB adaptor protein 1a.
    
 0.829
mylip
Myosin regulatory light chain interacting protein a.
    
 0.819
dab2
DAB adaptor protein 2.
    
 0.807
ENSSPAP00000007013
DAB adaptor protein 1b.
    
 0.804
LOC103371229
Low density lipoprotein receptor adaptor protein 1a.
    
 0.800
dkk1
Dickkopf WNT signaling pathway inhibitor 1a.
    
 0.790
ENSSPAP00000008411
Si:dkey-71h2.2.
    
  0.775
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.