STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctcfCCCTC-binding factor (zinc finger protein). (873 aa)    
Predicted Functional Partners:
ak9
Adenylate kinase 9.
    
  0.862
RAD21
RAD21 cohesin complex component.
   
 0.828
ENSSPAP00000020133
Rad21_Rec8_N domain-containing protein.
   
 0.828
LOC103353832
RAD21 cohesin complex component a.
   
 0.828
LOC103363259
Stromal antigen 2a.
   
 
 0.647
stag1
Stromal antigen 1a.
   
 
 0.647
ENSSPAP00000003910
SCD domain-containing protein.
   
 
 0.647
LOC103357720
Si:ch211-269e2.1.
   
 
 0.647
LOC103354693
Stromal antigen 2b.
   
 
 0.647
ep300
E1A binding protein p300 b.
   
 0.641
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.