STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103359999Bromodomain PHD finger transcription factor. (3399 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 
 0.941
hells
Helicase, lymphoid specific.
   
 
 0.822
chd1l
Chromodomain helicase DNA binding protein 1-like.
   
 
 0.822
LOC103357771
Remodeling and spacing factor 1b, tandem duplicate 1.
   
 
 0.791
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 
0.776
phf3
PHD finger protein 3.
   
    0.759
LOC103366349
Retinoblastoma binding protein 4, like.
    
 
 0.754
RBBP4
RB binding protein 4, chromatin remodeling factor.
    
 
 0.754
LOC103357053
RB binding protein 4, chromatin remodeling factor.
    
 
 0.754
ENSSPAP00000006493
Uncharacterized protein.
   
    0.732
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.