STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103373426NACHT domain-containing protein. (757 aa)    
Predicted Functional Partners:
nek7
NIMA-related kinase 7; Belongs to the protein kinase superfamily.
    
 0.589
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
 0.583
ripk4
Receptor-interacting serine-threonine kinase 4.
    
 0.579
rps27a
Ribosomal protein S27a.
    
  0.533
ankra2
Ankyrin repeat, family A (RFXANK-like), 2.
    
 0.524
rfxank
Regulatory factor X-associated ankyrin-containing protein.
    
 0.524
ENSSPAP00000001291
Si:ch1073-143l10.2.
    
 0.513
atg16l1
ATG16 autophagy related 16-like 1 (S. cerevisiae).
    
 0.513
LOC103361834
WD_REPEATS_REGION domain-containing protein.
    
 0.513
LOC103362339
Interleukin-1.
    
 0.503
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.