STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103361062Uncharacterized protein. (93 aa)    
Predicted Functional Partners:
tmem167a
Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.
   
   0.701
yipf5
Protein YIPF.
   
 
 0.610
selenos
Selenoprotein S.
   
 
 0.593
mrps21
Mitochondrial ribosomal protein S21.
   
    0.574
yipf4
Protein YIPF.
   
 
 0.564
tmem167b
Protein kish; Involved in the early part of the secretory pathway.
   
   0.518
yif1a
Yip1 interacting factor homolog A (S. cerevisiae).
    
 
 0.492
yif1b
Yip1 interacting factor homolog B (S. cerevisiae).
    
 
 0.492
yipf6
Protein YIPF.
      
 0.418
rabac1
PRA1 family protein.
      
 0.410
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.