STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103354503FAT atypical cadherin 3b. (4358 aa)    
Predicted Functional Partners:
fjx1
Four-jointed box kinase 1.
   
 0.959
psen2
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.
    
  0.850
psen1
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.
    
  0.850
LOC103368490
APH1B gamma secretase subunit.
     
 0.835
NCSTN
Nicastrin.
   
  0.828
LOC103360593
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 0.826
LOC103364881
NUMB like endocytic adaptor protein.
    
 0.816
numb
NUMB endocytic adaptor protein.
    
 0.816
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.816
LOC103353178
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.816
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.