STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSNK1DCasein kinase 1 delta; Belongs to the protein kinase superfamily. (414 aa)    
Predicted Functional Partners:
ltv1
LTV1 ribosome biogenesis factor.
    
 0.970
bysl
Bystin-like.
    
 0.920
gja1
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
    
  0.917
smo
Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.
    
  0.912
riok2
RIO kinase 2 (yeast).
    
 0.911
csnk1d
Casein kinase 1 delta; Belongs to the protein kinase superfamily.
  
  
 
0.898
csnk1a1
Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.
  
0.888
tsr1
TSR1 ribosome maturation factor.
    
 0.874
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.856
LOC103366709
Period circadian clock 2.
    
 0.833
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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