STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103373448Spindlin a. (261 aa)    
Predicted Functional Partners:
yrdc
YrdC N(6)-threonylcarbamoyltransferase domain containing.
    
   0.577
ENSSPAP00000003571
Uncharacterized protein.
    
   0.544
APP
Amyloid beta precursor protein.
  
     0.444
LOC103352860
Amyloid beta (A4) precursor protein b.
  
     0.441
aplp2
Amyloid beta (A4) precursor-like protein 2.
  
     0.435
topors
Topoisomerase I binding, arginine/serine-rich a.
    
 
 0.431
LOC103365249
RING-type domain-containing protein.
    
 
 0.431
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.