STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103365967Olfactomedin-like domain-containing protein. (460 aa)    
Predicted Functional Partners:
wdr36
WD repeat domain 36.
      
 0.499
LOC103370624
Uncharacterized protein.
   
  
 0.497
mfap5
Microfibril associated protein 5.
   
  
 0.491
optn
Optineurin.
      
 0.487
LOC103365806
Opticin.
    
 
 0.460
LOC103360623
SPARC-like 1.
    
 
 0.460
tsku
Tsukushi small leucine rich proteoglycan homolog (Xenopus laevis).
    
 
 0.403
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.