STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chatCholine O-acetyltransferase a; Belongs to the carnitine/choline acetyltransferase family. (686 aa)    
Predicted Functional Partners:
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
   
 
 0.914
LOC103356165
Choline kinase alpha.
 
 
 
  0.900
ENSSPAP00000025332
Phosphatase, orphan 1.
     
 0.899
LOC103364922
Uncharacterized protein.
     
 0.898
chkb
Choline kinase beta.
 
 
 
  0.898
rpp14
Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
   
 0.873
LOC103376286
Uncharacterized protein; Belongs to the carnitine/choline acetyltransferase family.
  
  
 
0.865
CHAT
Choline O-acetyltransferase; Belongs to the carnitine/choline acetyltransferase family.
  
  
 
0.865
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.816
LOC103368474
Sterol carrier protein 2b.
   
 0.816
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.