Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC103374057Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2b. (268 aa)    
Predicted Functional Partners:
LOC103373748
RRM domain-containing protein.
     
 0.777
LOC103360806
Myozenin 2b.
   
    0.739
LOC103360331
Myozenin 2a.
   
    0.739
rbm47
RNA binding motif protein 47.
     
 0.730
ada
Adenosine deaminase.
   
  
 0.690
smyd1
SET and MYND domain containing 1b.
   
    0.690
LOC103372696
SET domain-containing protein.
   
    0.690
ENSSPAP00000030034
MYND-type domain-containing protein.
   
    0.690
LOC103363874
Myosin, light chain 1, alkali; skeletal, fast.
   
    0.646
ENSSPAP00000006809
Uncharacterized protein.
      
 0.645
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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