ENSSPAP00000006978 protein (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSPAP00000006978

Beta-carotene oxygenase 1, like. (525 aa)

Predicted Functional Partners:

ALDH1A1

0.918

aldh1a2

0.918

aox1

0.913

dhrs3

0.912

LOC103358410

0.911

sdr16c5

0.901

LOC103355614

0.901

LOC103355616

0.901

LOC103354031

0.901

LOC103354032

0.901

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALDH1A1	ENSSPAP00000006978	ENSSPAP00000002235	ENSSPAP00000006978	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Beta-carotene oxygenase 1, like.	0.918
ALDH1A1	LOC103354031	ENSSPAP00000002235	ENSSPAP00000011822	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.932
ALDH1A1	LOC103354032	ENSSPAP00000002235	ENSSPAP00000011901	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	PKS_ER domain-containing protein.	0.932
ALDH1A1	LOC103355614	ENSSPAP00000002235	ENSSPAP00000007798	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.932
ALDH1A1	LOC103355616	ENSSPAP00000002235	ENSSPAP00000007834	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Zgc:77938.	0.932
ALDH1A1	LOC103358410	ENSSPAP00000002235	ENSSPAP00000011213	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Dehydrogenase/reductase (SDR family) member 4.	0.929
ALDH1A1	aldh1a2	ENSSPAP00000002235	ENSSPAP00000010244	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.	0.899
ALDH1A1	aox1	ENSSPAP00000002235	ENSSPAP00000006864	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Aldehyde oxidase 6.	0.918
ALDH1A1	dhrs3	ENSSPAP00000002235	ENSSPAP00000024599	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.930
ALDH1A1	sdr16c5	ENSSPAP00000002235	ENSSPAP00000006547	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.930
ENSSPAP00000006978	ALDH1A1	ENSSPAP00000006978	ENSSPAP00000002235	Beta-carotene oxygenase 1, like.	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	0.918
ENSSPAP00000006978	LOC103354031	ENSSPAP00000006978	ENSSPAP00000011822	Beta-carotene oxygenase 1, like.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.901
ENSSPAP00000006978	LOC103354032	ENSSPAP00000006978	ENSSPAP00000011901	Beta-carotene oxygenase 1, like.	PKS_ER domain-containing protein.	0.901
ENSSPAP00000006978	LOC103355614	ENSSPAP00000006978	ENSSPAP00000007798	Beta-carotene oxygenase 1, like.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.901
ENSSPAP00000006978	LOC103355616	ENSSPAP00000006978	ENSSPAP00000007834	Beta-carotene oxygenase 1, like.	Zgc:77938.	0.901
ENSSPAP00000006978	LOC103358410	ENSSPAP00000006978	ENSSPAP00000011213	Beta-carotene oxygenase 1, like.	Dehydrogenase/reductase (SDR family) member 4.	0.911
ENSSPAP00000006978	aldh1a2	ENSSPAP00000006978	ENSSPAP00000010244	Beta-carotene oxygenase 1, like.	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.	0.918
ENSSPAP00000006978	aox1	ENSSPAP00000006978	ENSSPAP00000006864	Beta-carotene oxygenase 1, like.	Aldehyde oxidase 6.	0.913
ENSSPAP00000006978	dhrs3	ENSSPAP00000006978	ENSSPAP00000024599	Beta-carotene oxygenase 1, like.	Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.912
ENSSPAP00000006978	sdr16c5	ENSSPAP00000006978	ENSSPAP00000006547	Beta-carotene oxygenase 1, like.	Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.901