STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TLR5Toll like receptor 5; Belongs to the Toll-like receptor family. (900 aa)    
Predicted Functional Partners:
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.951
unc93b1
Unc-93 homolog B1, TLR signaling regulator.
    
 0.863
nfkb2
Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).
   
 0.837
nfkb1
Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.
   
 0.837
TIRAP
TIR domain containing adaptor protein.
   
 0.825
LOC103361723
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.818
LOC103367507
TNF receptor-associated factor 6-like.
   
 0.818
rela
V-rel avian reticuloendotheliosis viral oncogene homolog A.
   
 0.776
REL
REL proto-oncogene, NF-kB subunit.
   
 0.776
relb
V-rel avian reticuloendotheliosis viral oncogene homolog B.
   
 0.776
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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