STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox3SRY-box transcription factor 3. (300 aa)    
Predicted Functional Partners:
LOC103374273
POU domain protein.
    
 0.881
LOC103354555
Nanog homeobox.
    
 0.710
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.689
LOC103353422
Doublesex and mab-3 related transcription factor 1.
    
 0.656
ENSSPAP00000030009
Uncharacterized protein.
    
 0.641
sall4
Spalt-like transcription factor 4.
   
 0.634
wt1
WT1 transcription factor b.
    
 0.625
gata4
GATA binding protein 4.
    
 0.593
LOC103361279
Lymphoid enhancer-binding factor 1.
    
 0.587
pou3f3
POU domain protein.
   
 0.579
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.