STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efhd2EF-hand domain family, member D2. (233 aa)    
Predicted Functional Partners:
capzb
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 0.751
rhof
Ras homolog family member F.
   
 
  0.521
VAMP3
Vesicle associated membrane protein 3.
   
 
  0.490
trip12
Thyroid hormone receptor interactor 12.
   
  
 0.449
invs
Inversin.
    
 
 0.431
lmnb1
Lamin B1; Belongs to the intermediate filament family.
   
 
  0.407
ENSSPAP00000002652
Uncharacterized protein; Belongs to the intermediate filament family.
   
 
  0.407
lmnb2
Lamin B2; Belongs to the intermediate filament family.
   
 
  0.407
lmna
Lamin A; Belongs to the intermediate filament family.
   
 
  0.407
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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