STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yif1bYip1 interacting factor homolog B (S. cerevisiae). (305 aa)    
Predicted Functional Partners:
yipf5
Protein YIPF.
   
 
 0.900
selenos
Selenoprotein S.
   
 
 0.897
yipf4
Protein YIPF.
   
 
 0.840
rabac1
PRA1 family protein.
   
 
 0.822
maea
Macrophage erythroblast attacher.
   
 
 0.707
yipf1
Protein YIPF.
   
  
 0.608
YIPF2
Protein YIPF.
   
  
 0.542
LOC103375770
Protein YIPF1-like.
   
  
 0.542
LOC103375385
Uncharacterized protein.
   
 
 0.525
rab1a
Uncharacterized protein.
   
 
 0.525
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.