STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc14Zinc finger, CCHC domain containing 14. (737 aa)    
Predicted Functional Partners:
ENSSPAP00000009501
Uncharacterized protein.
 
 
  
 0.904
tent4a
Terminal nucleotidyltransferase 4A.
   
 
 0.794
LOC103367002
Uncharacterized protein.
   
 
 0.794
tent4b
Terminal nucleotidyltransferase 4B.
   
 
 0.794
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.672
ENSSPAP00000015226
Helicase ATP-binding domain-containing protein.
   
 
 0.672
ENSSPAP00000019344
GTP binding protein 4.
   
   0.620
GTPBP4
OBG-type G domain-containing protein.
   
   0.620
pum3
Pumilio RNA-binding family member 3.
   
   0.591
mak16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
   0.583
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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