STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdh13Cadherin 13, H-cadherin (heart). (660 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.786
LOC103359554
Uncharacterized protein.
    
 0.712
LOC103362533
Junction plakoglobin a.
    
 0.712
LOC103371495
Uncharacterized protein.
    
 0.694
LOC103367196
Catenin (cadherin-associated protein), delta 1.
    
 0.692
CTNND1
Catenin delta 1.
    
 0.692
ctnna2
Catenin (cadherin-associated protein), alpha 2.
    
 0.686
ctnna1
Catenin (cadherin-associated protein), alpha 1.
    
 0.686
ENSSPAP00000027537
Uncharacterized protein.
    
 0.686
ENSSPAP00000012864
Uncharacterized protein.
    
 0.680
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.