STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vrtnVertebrae development associated. (661 aa)    
Predicted Functional Partners:
tmem192
Uncharacterized protein.
    
 0.578
abcd4
ATP-binding cassette, sub-family D (ALD), member 4.
      
 0.523
sybu
Syntabulin (syntaxin-interacting).
      
 0.510
AREL1
Apoptosis resistant E3 ubiquitin protein ligase 1.
      
 0.485
asmtl
Acetylserotonin O-methyltransferase-like.
     
 0.473
LOC103371831
Potassium channel tetramerization domain containing 2.
    
  0.460
LOC103358548
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.460
ube2i
Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.460
nr6a1
Nuclear receptor subfamily 6, group A, member 1a.
    
 
 0.418
mettl11b
Methyltransferase like 11B.
     
 0.410
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.