STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103375821MINDY_DUB domain-containing protein. (134 aa)    
Predicted Functional Partners:
UBB
Ubiquitin B.
    
   0.843
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
   0.843
rps27a
Ribosomal protein S27a.
    
   0.733
setd3
Protein-histidine N-methyltransferase.
    
 0.726
mmut
Methylmalonyl CoA mutase.
    
 0.726
setd4
SET domain containing 4.
    
 0.726
ENSSPAP00000000794
Ubiquitin-like domain-containing protein.
   
   0.695
rnf126
RING-type domain-containing protein.
    
  0.602
LOC103357602
Ring finger protein 126.
    
  0.602
LOC103356335
Si:ch211-81a5.1.
    
  0.587
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.