LOC103369540 protein (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103369540

F5/8 type C domain-containing protein. (768 aa)

Predicted Functional Partners:

gak

0.981

dnajc6

0.624

ENSSPAP00000003977

0.530

yipf6

0.506

gnb5

0.506

LOC103368832

0.480

ENSSPAP00000000438

0.480

ENSSPAP00000002553

0.480

ENSSPAP00000028635

0.480

ap1g1

0.437

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000000438	LOC103369540	ENSSPAP00000000438	ENSSPAP00000010307	Uncharacterized protein.	F5/8 type C domain-containing protein.	0.480
ENSSPAP00000002553	LOC103369540	ENSSPAP00000002553	ENSSPAP00000010307	Uncharacterized protein.	F5/8 type C domain-containing protein.	0.480
ENSSPAP00000003977	LOC103369540	ENSSPAP00000003977	ENSSPAP00000010307	Uncharacterized protein.	F5/8 type C domain-containing protein.	0.530
ENSSPAP00000003977	ap1g1	ENSSPAP00000003977	ENSSPAP00000007599	Uncharacterized protein.	AP-1 complex subunit gamma.	0.747
ENSSPAP00000003977	dnajc6	ENSSPAP00000003977	ENSSPAP00000020228	Uncharacterized protein.	DnaJ (Hsp40) homolog, subfamily C, member 6.	0.985
ENSSPAP00000003977	gak	ENSSPAP00000003977	ENSSPAP00000016802	Uncharacterized protein.	Cyclin G associated kinase.	0.988
ENSSPAP00000003977	gnb5	ENSSPAP00000003977	ENSSPAP00000030677	Uncharacterized protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.749
ENSSPAP00000028635	LOC103369540	ENSSPAP00000028635	ENSSPAP00000010307	Uncharacterized protein.	F5/8 type C domain-containing protein.	0.480
LOC103368832	LOC103369540	ENSSPAP00000000404	ENSSPAP00000010307	Uncharacterized protein.	F5/8 type C domain-containing protein.	0.480
LOC103369540	ENSSPAP00000000438	ENSSPAP00000010307	ENSSPAP00000000438	F5/8 type C domain-containing protein.	Uncharacterized protein.	0.480
LOC103369540	ENSSPAP00000002553	ENSSPAP00000010307	ENSSPAP00000002553	F5/8 type C domain-containing protein.	Uncharacterized protein.	0.480
LOC103369540	ENSSPAP00000003977	ENSSPAP00000010307	ENSSPAP00000003977	F5/8 type C domain-containing protein.	Uncharacterized protein.	0.530
LOC103369540	ENSSPAP00000028635	ENSSPAP00000010307	ENSSPAP00000028635	F5/8 type C domain-containing protein.	Uncharacterized protein.	0.480
LOC103369540	LOC103368832	ENSSPAP00000010307	ENSSPAP00000000404	F5/8 type C domain-containing protein.	Uncharacterized protein.	0.480
LOC103369540	ap1g1	ENSSPAP00000010307	ENSSPAP00000007599	F5/8 type C domain-containing protein.	AP-1 complex subunit gamma.	0.437
LOC103369540	dnajc6	ENSSPAP00000010307	ENSSPAP00000020228	F5/8 type C domain-containing protein.	DnaJ (Hsp40) homolog, subfamily C, member 6.	0.624
LOC103369540	gak	ENSSPAP00000010307	ENSSPAP00000016802	F5/8 type C domain-containing protein.	Cyclin G associated kinase.	0.981
LOC103369540	gnb5	ENSSPAP00000010307	ENSSPAP00000030677	F5/8 type C domain-containing protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.506
LOC103369540	yipf6	ENSSPAP00000010307	ENSSPAP00000004646	F5/8 type C domain-containing protein.	Protein YIPF.	0.506
ap1g1	ENSSPAP00000003977	ENSSPAP00000007599	ENSSPAP00000003977	AP-1 complex subunit gamma.	Uncharacterized protein.	0.747