STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc47Coiled-coil domain containing 47. (486 aa)    
Predicted Functional Partners:
ncln
Nicalin.
    
 
 0.951
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
    
 
 0.951
tmem147
Transmembrane protein 147.
    
 
 0.943
LOC103376131
Nicalin; May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning.
    
 
 0.933
wdr83os
WD repeat domain 83 opposite strand.
    
 
 0.909
ENSSPAP00000004289
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
 
 0.904
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
   0.892
ENSSPAP00000029682
Uncharacterized protein.
   
   0.891
rpl21
Ribosomal protein L21.
   
   0.890
LOC103375513
Plug_translocon domain-containing protein.
   
 
 0.887
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.