STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
upf3aUPF3A regulator of nonsense mediated mRNA decay. (477 aa)    
Predicted Functional Partners:
ENSSPAP00000013853
Upf2 domain-containing protein.
   
 0.990
ENSSPAP00000018995
MIF4G domain-containing protein.
   
 0.990
magoh
Mago homolog, exon junction complex subunit.
    
 0.988
LOC103367511
Uncharacterized protein.
    
 0.986
UPF1
UPF1 RNA helicase and ATPase.
    
 0.986
ranbp2
RAN binding protein 2.
   
 
  0.980
smg5
SMG5 nonsense mediated mRNA decay factor.
   
 0.979
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.979
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.978
srrm1
Serine/arginine repetitive matrix 1.
    
 0.974
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.