STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
magohMago homolog, exon junction complex subunit. (147 aa)    
Predicted Functional Partners:
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.999
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.999
casc3
Casc3 exon junction complex subunit.
    
 0.993
pym1
PYM homolog 1, exon junction complex associated factor.
    
 
 0.991
upf3a
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.988
upf3b
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.988
ranbp2
RAN binding protein 2.
   
 0.987
ALYREF
Aly/REF export factor.
   
 0.980
LOC103366532
RRM domain-containing protein.
   
 0.977
ENSSPAP00000021266
Uncharacterized protein.
   
 0.969
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.