STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recqlATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (636 aa)    
Predicted Functional Partners:
LOC103372659
Threonine aldolase 1.
    
  0.816
otc
Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
 
 0.810
asl
Argininosuccinate lyase.
    
 0.807
coq3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
    
  0.799
card9
CARD domain-containing protein.
  
 
  0.792
pyroxd1
Pyridine nucleotide-disulphide oxidoreductase domain 1.
    
 0.749
fdxr
NADPH:adrenodoxin oxidoreductase, mitochondrial.
   
 
  0.705
FADS6
Fatty acid desaturase 6.
   
 
  0.705
ENSSPAP00000018475
Uncharacterized protein.
    
 0.698
ASS1
Argininosuccinate synthase 1.
    
 0.698
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.