STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103358414Solute carrier family 7 member 8a. (526 aa)    
Predicted Functional Partners:
LOC103353937
Solute carrier family 3 member 2b.
  
 0.825
LOC103356347
Si:dkey-202g17.3.
  
 0.825
slc3a2
Zgc:158423.
  
 0.825
slc3a1
Solute carrier family 3 member 1.
  
 0.784
LOC103355445
2-epi-5-epi-valiolone synthase.
   
 0.760
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
  
 0.670
kiaa0513
Zgc:91860.
  
 0.670
alkbh3
AlkB homolog 3, alpha-ketoglutarate-dependent dioxygenase.
  
 0.670
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
   
  0.645
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.580
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.