ENSSPAP00000011416 protein (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSPAP00000011416

Si:dkey-30e9.7. (1259 aa)

Predicted Functional Partners:

rbpj

0.683

LOC103353178

0.683

NCSTN

0.653

LOC103360593

0.644

LOC103373263

0.620

LOC103364881

0.619

numb

0.619

PTK7

0.617

lrguk

0.617

psen2

0.615

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000011416	LOC103353178	ENSSPAP00000011416	ENSSPAP00000024981	Si:dkey-30e9.7.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.683
ENSSPAP00000011416	LOC103360593	ENSSPAP00000011416	ENSSPAP00000026604	Si:dkey-30e9.7.	Recombination signal binding protein for immunoglobulin kappa J region-like.	0.644
ENSSPAP00000011416	LOC103364881	ENSSPAP00000011416	ENSSPAP00000001079	Si:dkey-30e9.7.	NUMB like endocytic adaptor protein.	0.619
ENSSPAP00000011416	LOC103373263	ENSSPAP00000011416	ENSSPAP00000030243	Si:dkey-30e9.7.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.620
ENSSPAP00000011416	NCSTN	ENSSPAP00000011416	ENSSPAP00000028034	Si:dkey-30e9.7.	Nicastrin.	0.653
ENSSPAP00000011416	PTK7	ENSSPAP00000011416	ENSSPAP00000008528	Si:dkey-30e9.7.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.617
ENSSPAP00000011416	lrguk	ENSSPAP00000011416	ENSSPAP00000011656	Si:dkey-30e9.7.	Leucine-rich repeats and guanylate kinase domain containing.	0.617
ENSSPAP00000011416	numb	ENSSPAP00000011416	ENSSPAP00000003212	Si:dkey-30e9.7.	NUMB endocytic adaptor protein.	0.619
ENSSPAP00000011416	psen2	ENSSPAP00000011416	ENSSPAP00000002337	Si:dkey-30e9.7.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.615
ENSSPAP00000011416	rbpj	ENSSPAP00000011416	ENSSPAP00000018499	Si:dkey-30e9.7.	Recombination signal binding protein for immunoglobulin kappa J region.	0.683
LOC103353178	ENSSPAP00000011416	ENSSPAP00000024981	ENSSPAP00000011416	Recombination signal binding protein for immunoglobulin kappa J region a.	Si:dkey-30e9.7.	0.683
LOC103353178	LOC103360593	ENSSPAP00000024981	ENSSPAP00000026604	Recombination signal binding protein for immunoglobulin kappa J region a.	Recombination signal binding protein for immunoglobulin kappa J region-like.	0.829
LOC103353178	rbpj	ENSSPAP00000024981	ENSSPAP00000018499	Recombination signal binding protein for immunoglobulin kappa J region a.	Recombination signal binding protein for immunoglobulin kappa J region.	0.898
LOC103360593	ENSSPAP00000011416	ENSSPAP00000026604	ENSSPAP00000011416	Recombination signal binding protein for immunoglobulin kappa J region-like.	Si:dkey-30e9.7.	0.644
LOC103360593	LOC103353178	ENSSPAP00000026604	ENSSPAP00000024981	Recombination signal binding protein for immunoglobulin kappa J region-like.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.829
LOC103360593	rbpj	ENSSPAP00000026604	ENSSPAP00000018499	Recombination signal binding protein for immunoglobulin kappa J region-like.	Recombination signal binding protein for immunoglobulin kappa J region.	0.829
LOC103364881	ENSSPAP00000011416	ENSSPAP00000001079	ENSSPAP00000011416	NUMB like endocytic adaptor protein.	Si:dkey-30e9.7.	0.619
LOC103364881	NCSTN	ENSSPAP00000001079	ENSSPAP00000028034	NUMB like endocytic adaptor protein.	Nicastrin.	0.497
LOC103364881	numb	ENSSPAP00000001079	ENSSPAP00000003212	NUMB like endocytic adaptor protein.	NUMB endocytic adaptor protein.	0.836
LOC103373263	ENSSPAP00000011416	ENSSPAP00000030243	ENSSPAP00000011416	Transforming growth factor beta; Belongs to the TGF-beta family.	Si:dkey-30e9.7.	0.620