STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps6kl1Ribosomal protein S6 kinase-like 1. (790 aa)    
Predicted Functional Partners:
rint1
RAD50 interactor 1.
    
 0.872
stx18
Syntaxin 18.
    
 0.854
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
 0.848
vegfd
Vascular endothelial growth factor D; Belongs to the PDGF/VEGF growth factor family.
    
  0.819
zw10
Zw10 kinetochore protein.
    
 0.815
nbas
Neuroblastoma amplified sequence.
   
 0.795
snx3
Sorting nexin 3.
     
 0.738
snx12
Sorting nexin 12.
     
 0.738
LOC103358005
SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family.
   
 0.709
sec22a
SEC22 homolog A, vesicle trafficking protein; Belongs to the synaptobrevin family.
   
 0.709
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.