STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubox5U-box domain containing 5. (631 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 0.954
birc6
Baculoviral IAP repeat containing 6.
   
 0.947
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.935
yod1
YOD1 deubiquitinase.
    
 
 0.928
faap100
Si:dkey-57h18.1.
    
 
 0.890
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.890
ube2z
Ubiquitin-conjugating enzyme E2Z.
   
 0.850
ubl7
Ubiquitin-like 7b (bone marrow stromal cell-derived).
   
 0.843
ENSSPAP00000010151
UBA domain-containing protein.
   
 0.843
ubqln4
Ubiquilin 4.
   
 0.843
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.