STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103359031Transmembrane protein 54a. (247 aa)    
Predicted Functional Partners:
ttc22
Tetratricopeptide repeat domain 22.
   
  
 0.528
kif16b
Kinesin family member 16Ba; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.472
pik3r4
Phosphoinositide-3-kinase, regulatory subunit 4.
      
 0.461
GPRC5D
G protein-coupled receptor class C group 5 member D.
      
 0.444
LOC103360061
Speriolin_C domain-containing protein.
      
 0.420
LOC103353781
Thrombospondin-type laminin G domain and EAR repeats a.
      
 0.420
ENSSPAP00000030227
Thrombospondin-type laminin G domain and EAR repeats b.
      
 0.420
LOC103361991
Uncharacterized protein.
      
 0.418
pm20d1
Peptidase M20 domain containing 1, tandem duplicate 2.
      
 0.405
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.