STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103355149RING-CH-type domain-containing protein. (926 aa)    
Predicted Functional Partners:
MARCHF6
Membrane associated ring-CH-type finger 6.
  
  
 
0.830
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.795
ENSSPAP00000008883
Uncharacterized protein.
    
 
 0.778
cnot2
CCR4-NOT transcription complex, subunit 2.
    
 
 0.778
LOC103366440
NOT2_3_5 domain-containing protein.
    
 
 0.778
ube2j2
Ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast).
    
 
 0.758
amfr
Autocrine motility factor receptor b.
    
 
 0.748
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.748
c1qtnf12
C1q and TNF related 12.
    
 
 0.742
SPATA5
Spermatogenesis associated 5.
    
 
 0.740
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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